Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_654532_654823_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

654532 - 654823

Intron Length:

292

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAACA

5'SS Class:

strong_major

3'SS Sequence:

TTTCATCCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TGTGTGTTAACC

Flanking Amino Acid:

ESLKGKILVKGKKLPANISD

Intron Amino Acid Position:

431

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.8

31.6

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

78.7

0.65

0.8

70.7

35.8

Minor 5ss

33.1

-1.9

2.9

41.4

44.7

Minor BPS

55.4

0.15

2.2

70.25

41.4

Associated Gene:

Gene:

PLCH2

Ensembl Gene ID:

ENSAPLG00000008995

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024566

608633 - 677192

68560

ENSAPLT00000009364

616883 - 675778

58896