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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6558092_6558708_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6558092 - 6558708
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCAATTTTACTT
Flanking Amino Acid:
GIVFSVIFFKRKTWPIAFGS
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71.6
0.49
0.8
64.6
31
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
49.7
0.06
1.6
64.2
41.1

Associated Gene:

Gene:
MICOS10
Ensembl Gene ID:
ENSAPLG00000020033
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045694
6557823 - 6569617
11795