About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6558757_6569550_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6558757 - 6569550
Intron Length:
10794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGGGCG
5'SS Class:
major
3'SS Sequence:
TTTATTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATTCTTACAG
Flanking Amino Acid:
RCLADSAVKLGAGFGLGIVF
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
53.8
42.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
89.7
0.89
0.7
84.3
30.6
Minor 5ss
28
-2.5
3.6
29.8
43.2
Minor BPS
57.3
0.09
1.8
65.06
42.6

Associated Gene:

Gene:
MICOS10
Ensembl Gene ID:
ENSAPLG00000020033
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045694
6557823 - 6569617
11795