Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_657223_658215_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

657223 - 658215

Intron Length:

993

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCAC

5'SS Class:

strong_major

3'SS Sequence:

CATTCTGGCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TTTTATTTCATT

Flanking Amino Acid:

TLMGSFSKRKKKGSKLKKAT

Intron Amino Acid Position:

551

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

68.4

38.7

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

66.1

0.36

60.2

40.1

Minor 5ss

32.7

-2

45.6

Minor BPS

61.3

0.44

1.9

84.41

36.8

Associated Gene:

Gene:

PLCH2

Ensembl Gene ID:

ENSAPLG00000008995

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024566

608633 - 677192

68560

ENSAPLT00000009364

616883 - 675778

58896