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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6609927_6614993_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6609927 - 6614993
Intron Length:
5067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TGTTGTCTAACT
Flanking Amino Acid:
CDYNRDGDSYRSPWSNKYDP
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
72.7
0.51
1
68.9
37.1
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
57.3
0.31
2.1
81.32
40.3

Associated Gene:

Gene:
CAPZB
Ensembl Gene ID:
ENSAPLG00000014614
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022911
6596024 - 6639910
43887
ENSAPLT00000015257
6596024 - 6641907
45884