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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_66190_66431_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66190 - 66431
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TAATTCAAAATT
Flanking Amino Acid:
VKKKFCTFREDYDDISNQID
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
72
0.49
0.9
63
43.6
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
49.6
0.05
1.9
70.54
40.5

Associated Gene:

Gene:
NADK
Ensembl Gene ID:
ENSAPLG00000011328
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011820
61340 - 75438
14099