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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_662976_668910_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
662976 - 668910
Intron Length:
5935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
HVAINDICGKVKQALGLKGL
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88
0.85
0.8
80.4
37
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
PLCH2
Ensembl Gene ID:
ENSAPLG00000008995
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024566
608633 - 677192
68560
ENSAPLT00000009364
616883 - 675778
58896