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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6638519_6639807_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6638519 - 6639807
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CGTTTCCAAACT
Flanking Amino Acid:
GKTKDIVNGLRSIDAIPDNQ
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
74.8
0.56
0.8
69.7
31.1
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
50.4
0.09
2
72.75
44.1

Associated Gene:

Gene:
CAPZB
Ensembl Gene ID:
ENSAPLG00000014614
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022911
6596024 - 6639910
43887