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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6638519_6641819_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6638519 - 6641819
Intron Length:
3301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTGTTTTTACTT
Flanking Amino Acid:
GKTKDIVNGLRSVQTFADKS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.9
0.72
0.7
76.6
25.6
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
57.5
0.31
1.6
71.32
40.7

Associated Gene:

Gene:
CAPZB
Ensembl Gene ID:
ENSAPLG00000014614
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015257
6596024 - 6641907
45884