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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6646464_6646751_R

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
6646464 - 6646751
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AACGTCTTCCCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TGAGCCTTAACG
Flanking Amino Acid:
SLGVLSLDVVISFQFLAYRR
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.5
-0
1.4
55
44.6
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
67.9
0.4
0.9
58
42.3
Minor 5ss
95.1
1.52
0.8
90.6
20
Minor BPS
70.8
0.51
1.5
69.24
43.7

Associated Gene:

Gene:
SLC66A1
Ensembl Gene ID:
ENSAPLG00000014448
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015055
6646332 - 6649467
3136