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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6647415_6647499_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6647415 - 6647499
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCAGAG
U12 Branch Point Sequence:
TCGCTCAGAGCC
Flanking Amino Acid:
SAGLEEPESKPFTRSEIIGF
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
64.9
42.8
Major BPS
45.2
-0.3
1.5
44.1
39.6
Major PPT
83.5
0.75
0.8
77.1
31.6
Minor 5ss
31.8
-2.1
3
37.6
47.1
Minor BPS
41.7
-0.6
1.8
49.32
40.6

Associated Gene:

Gene:
SLC66A1
Ensembl Gene ID:
ENSAPLG00000014448
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015055
6646332 - 6649467
3136