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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6648938_6649032_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6648938 - 6649032
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTCC
5'SS Class:
weak_major
3'SS Sequence:
CCTCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
TTCCCTGGGACC
Flanking Amino Acid:
SFLANQLPLQVYTAVYYVLA
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
57.8
42.6
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
74.9
0.56
0.7
68.3
25.5
Minor 5ss
49.6
-0
2.7
69.2
41.6
Minor BPS
45
-0.4
2.1
59.54
40

Associated Gene:

Gene:
SLC66A1
Ensembl Gene ID:
ENSAPLG00000014448
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015055
6646332 - 6649467
3136