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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6650517_6651631_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6650517 - 6651631
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACGGGC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CCCTGCTCATCG
Flanking Amino Acid:
GSLLAAGEHSVEVATKANPW
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
56.3
42.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
78.4
0.64
0.9
73
37.3
Minor 5ss
34.7
-1.7
3.6
41.1
45.6
Minor BPS
41.4
-0.7
2.2
42.57
48.5

Associated Gene:

Gene:
AKR7L
Ensembl Gene ID:
ENSAPLG00000014206
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014844
6648590 - 6655090
6501