About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6651820_6652337_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
6651820 - 6652337

Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAA|GTAAAGTGG

5'SS Class:
major

3'SS Sequence:
CTTTTCTCTACAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CTTTTAT

U12 Branch Point Sequence:
TATCCTTTTATT

Flanking Amino Acid:
LRACNELHKEGKFKELGLSN

Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
68.1
0.43
1.1
57.4
42.4

Major BPS
84.1
0.85
0.9
75.3
39.4

Major PPT
89.4
0.89
0.6
84.1
24.1

Minor 5ss
37.2
-1.4
3.4
46.1
43.8

Minor BPS
62.6
0.48
1.6
78.34
38.2

Associated Gene:

Gene:
AKR7L

Ensembl Gene ID:

Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

6648590 - 6655090
6501