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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6652443_6653372_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6652443 - 6653372
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CACCTTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTGTCTTCACCT
Flanking Amino Acid:
NNWVMPTVYQGMYNATTRQV
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
73.2
0.52
1
68.1
37.1
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
59.7
0.38
1.9
79.76
42.7

Associated Gene:

Gene:
AKR7L
Ensembl Gene ID:
ENSAPLG00000014206
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014844
6648590 - 6655090
6501