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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6653470_6653697_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6653470 - 6653697
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGGGA
5'SS Class:
major
3'SS Sequence:
TGACCCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
CATCACTAAACA
Flanking Amino Acid:
LRFYAYNPLAGGLLTGKYKY
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
58.4
40.5
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
76
0.59
0.9
69.3
36.5
Minor 5ss
34.8
-1.7
3.5
43.4
46.2
Minor BPS
50.6
0.01
1.9
63.15
42.6

Associated Gene:

Gene:
AKR7L
Ensembl Gene ID:
ENSAPLG00000014206
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014844
6648590 - 6655090
6501