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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6656081_6656543_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6656081 - 6656543
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATGAC
U12 Branch Point Sequence:
TCTGCTCTATCC
Flanking Amino Acid:
ILTPEQARVLKLFGYEMAEF
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
49.7
-0
1.2
43.4
39.2
Major PPT
70
0.45
0.9
62.4
38.5
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
47.8
-0.1
2
62.27
43.6

Associated Gene:

Gene:
MRTO4
Ensembl Gene ID:
ENSAPLG00000013861
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014442
6655937 - 6658269
2333