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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6657109_6657383_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6657109 - 6657383
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CCATCTGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTCCTGTAGCT
Flanking Amino Acid:
FTNRTKEEVDDWFSKFKEVD
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.1
0.47
0.9
68.2
37.2
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
49.5
0.04
2.2
75.74
41

Associated Gene:

Gene:
MRTO4
Ensembl Gene ID:
ENSAPLG00000013861
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014442
6655937 - 6658269
2333