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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6657452_6657754_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6657452 - 6657754
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTTAT
U12 Branch Point Sequence:
GTTGCCTCAGCC
Flanking Amino Acid:
SSEYKENLHQVSKHLRGEVG
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
58.5
0.21
1.4
51.4
46
Major PPT
88.7
0.87
0.7
81.4
36
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
52.9
0.07
1.9
67.68
43.6

Associated Gene:

Gene:
MRTO4
Ensembl Gene ID:
ENSAPLG00000013861
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014442
6655937 - 6658269
2333