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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6657837_6657922_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6657837 - 6657922
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCCGC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
CCCTCCTTCACC
Flanking Amino Acid:
KDVRNAWKHSRIFFGKNKVM
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
54.4
44.7
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
81.4
0.71
0.7
76.7
25.3
Minor 5ss
33.3
-1.9
3.1
42.7
44.3
Minor BPS
61.5
0.34
1.8
65.58
46.5

Associated Gene:

Gene:
MRTO4
Ensembl Gene ID:
ENSAPLG00000013861
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014442
6655937 - 6658269
2333