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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6658027_6658109_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6658027 - 6658109
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CGGCTCTTCACA
Flanking Amino Acid:
LEAKQALIAELRKCADTYKH
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
70.7
0.47
0.9
64.8
35.5
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
49.2
-0
1.8
56.7
42.7

Associated Gene:

Gene:
MRTO4
Ensembl Gene ID:
ENSAPLG00000013861
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014442
6655937 - 6658269
2333