About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6658169_6658241_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6658169 - 6658241
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TATCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
GCTCCCTTCACT
Flanking Amino Acid:
MPKSRRDRKVSLTKTPKKG
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
56.7
42.7
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
76.2
0.59
0.8
70.2
30.3
Minor 5ss
33.3
-1.9
3
35.1
41
Minor BPS
64.8
0.55
1.8
78.23
43.7

Associated Gene:

Gene:
MRTO4
Ensembl Gene ID:
ENSAPLG00000013861
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014442
6655937 - 6658269
2333