About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6658625_6658703_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6658625 - 6658703
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TCCGCCTCACGG
Flanking Amino Acid:
VYEDQVGKFDWRQQYVGKLK
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
73
0.52
0.9
66.4
35.7
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
40.8
-0.8
2.1
42.41
48.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028555
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036262
6658542 - 6658836
295