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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_66887_70337_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66887 - 70337
Intron Length:
3451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGTTACAT
Flanking Amino Acid:
ACMLQNPKAIMHIQDPASQR
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.6
0.73
0.7
81.5
30.2
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
46.7
-0.1
2.3
73.28
43.5

Associated Gene:

Gene:
NADK
Ensembl Gene ID:
ENSAPLG00000011328
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011820
61340 - 75438
14099