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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6696428_6698062_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6696428 - 6698062
Intron Length:
1635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTGT
5'SS Class:
major
3'SS Sequence:
TTTCAGAGAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TAACCTCTAATT
Flanking Amino Acid:
CGAKEDGSCLNFCSRSGENS
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
65.5
40.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
49.7
-0
1.2
49.9
41.7
Minor 5ss
37.9
-1.4
3.5
52.7
46.4
Minor BPS
56.5
0.28
1.6
72.54
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021623
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024571
6696302 - 6698119
1818