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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6713097_6713559_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6713097 - 6713559
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGCAA
U12 Branch Point Sequence:
AGCTCTGTAAGT
Flanking Amino Acid:
LIAELCMDKKDVSKKNERSP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.7
82.9
36.3
Major BPS
48.5
-0
1.4
58
38.9
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
31.6
-2.1
4
49.7
46.6
Minor BPS
47.6
-0.1
2.2
66.31
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894