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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6715050_6716213_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6715050 - 6716213
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTCTCTCACTT
Flanking Amino Acid:
SPFFLRQYVKGHAADVFEAY
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
77.8
38.7
Major BPS
75
0.62
1
65.3
41.5
Major PPT
76.6
0.6
0.8
73.9
30
Minor 5ss
30.5
-2.2
2.9
41.4
45
Minor BPS
54.4
0.22
1.8
77.15
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894