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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6716364_6717087_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6716364 - 6717087
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTTCTTTGTTT
Flanking Amino Acid:
DHSWFYFLSEYLMIQQTPFV
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
74.2
36.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
84.1
0.77
0.8
84.8
30
Minor 5ss
28.3
-2.5
2.7
32
42.1
Minor BPS
49.4
0.03
3.5
86.34
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894