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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6717316_6717427_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6717316 - 6717427
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGGTATTTAATC
Flanking Amino Acid:
ALQYDTLISLMEHLKACAEI
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.2
0.7
0.9
77.7
36.7
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
62.9
0.39
1.5
67.79
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894