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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6717507_6717978_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6717507 - 6717978
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTCAGG
Flanking Amino Acid:
NWQKFCIKDDSVLYFLLQVS
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
70.8
35.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
40.3
-1.1
3
60.6
43.7
Minor BPS
44.7
-0.5
2.4
61.42
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894