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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6718222_6719161_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6718222 - 6719161
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
CGGTGTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCTTTCTTAAGT
Flanking Amino Acid:
KKEEKEKEREGESSGSQEDQ
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60.1
41.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
63.3
0.3
0.9
54.1
41.5
Minor 5ss
38.3
-1.3
3
41.6
45.3
Minor BPS
68.7
0.67
1.6
79.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894