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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6720094_6720761_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6720094 - 6720761
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
AATTGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TATTTCCTAATT
Flanking Amino Acid:
SLKTQQTEKKLKEYSQKAVE
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
75.5
0.57
1
71.1
43.3
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
69.4
0.69
1.6
85.62
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894