Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6720848_6721346_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6720848 - 6721346

Intron Length:

499

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CCCTTCATTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAT

U12 Branch Point Sequence:

CTTCCCTTCATT

Flanking Amino Acid:

LTNHPNSNIYNTLSGLVEFD

Intron Amino Acid Position:

542

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

81.1

26.3

Major BPS

0.62

1.1

77.2

Major PPT

78.1

0.63

0.8

69.2

35.6

Minor 5ss

-1

2.9

52.8

38.5

Minor BPS

65.2

0.56

1.8

81.08

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019485

6712464 - 6726357

13894