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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6721435_6721556_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6721435 - 6721556
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTGTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TATTGTTGGAAT
Flanking Amino Acid:
VCNNPEVPFCYIKLSSIKVD
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
71.8
38.2
Major BPS
73
0.57
1.2
74
41.2
Major PPT
86.2
0.81
0.7
84.7
30.2
Minor 5ss
39
-1.2
2.7
48.2
40.4
Minor BPS
47.3
-0.1
2
69.63
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894