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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6721751_6722842_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6721751 - 6722842
Intron Length:
1092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
CCCTGTTGAAAA
Flanking Amino Acid:
TVQAIVELKNKPARWHKAKK
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.9
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
48.3
-0.2
2.3
59
39.8
Minor BPS
43.8
-0.4
1.9
48.41
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894