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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6723083_6724226_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6723083 - 6724226
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTCTCATAGCT
Flanking Amino Acid:
GENVYQCHKCRSINYDEKDP
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.1
38.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.9
0.63
0.9
73.4
37.1
Minor 5ss
34.8
-1.7
3.2
49.6
46.6
Minor BPS
52
0.14
1.9
75.33
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894