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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6724366_6725109_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6724366 - 6725109
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
PIENEEDRKKAVTNINTLLD
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.9
0.7
0.7
76.7
30.9
Minor 5ss
28.9
-2.4
3.3
37.9
46.9
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894