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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6725539_6726009_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6725539 - 6726009
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATTTTATAATT
Flanking Amino Acid:
SFDELSKIIQKVFASRKELL
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81.4
0.71
0.9
72.6
42.4
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
65
0.55
1.5
81.43
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019485
6712464 - 6726357
13894