About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6727149_6727551_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6727149 - 6727551
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGAACATTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.8
0.69
0.9
77.4
36.3
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
49.4
-0
2
63.52
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011821
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012507
6726010 - 6749392
23383