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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6727680_6727844_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
6727680 - 6727844
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATCT
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTTTATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTCAAGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
67.8
38.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74
0.54
1.1
80.4
36.2
Minor 5ss
57.8
0.26
2.4
75.1
40.8
Minor BPS
49.7
0.05
2
75.26
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011821
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012507
6726010 - 6749392
23383