Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6727975_6728463_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

6727975 - 6728463

Intron Length:

489

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGTTCTG

5'SS Class:

major

3'SS Sequence:

TTCAGTATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAG

U12 Branch Point Sequence:

AGTTCTTGAGCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

1.1

65.5

45.9

Major BPS

60.8

0.27

1.6

71.4

45.1

Major PPT

76.4

0.59

0.9

69.8

40.2

Minor 5ss

36.5

-1.5

3.3

49.6

46.6

Minor BPS

58.6

0.35

1.7

76.39

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011821

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012507

6726010 - 6749392

23383