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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6730938_6731884_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6730938 - 6731884
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CATTGCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ACTTCCTTGAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.5
0.57
0.9
68.9
36.8
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
73.1
0.81
1.4
82.71
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011821
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012507
6726010 - 6749392
23383