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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6732609_6732997_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6732609 - 6732997
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGCTGTTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTATTTACTC
Flanking Amino Acid:
FERLCSIIYPEENEVTEFFV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.9
0.67
0.9
76.9
37.3
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
56.4
0.18
1.7
69.27
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011821
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012507
6726010 - 6749392
23383