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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6736999_6737731_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6736999 - 6737731
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TATTCCTGAATA
Flanking Amino Acid:
SNAEPLSEDKGNLLLTGDKD
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
83.5
0.75
0.8
77.8
29.3
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
76.4
0.83
1.3
81.89
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011821
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012507
6726010 - 6749392
23383