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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6744113_6747834_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6744113 - 6747834
Intron Length:
3722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCAC
5'SS Class:
major
3'SS Sequence:
ATTATCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATCT
Flanking Amino Acid:
TRVVSPGGASRMTDKAVKEY
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
63.2
43.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.3
0.55
0.9
66.5
39.9
Minor 5ss
33.6
-1.9
3
41.9
44.9
Minor BPS
67.8
0.64
1.8
87.99
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011821
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012507
6726010 - 6749392
23383