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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6760016_6785035_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6760016 - 6785035
Intron Length:
25020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTGCTGCAAAT
Flanking Amino Acid:
VKRERDEYKRKWEEELTRRM
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
59.5
39.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
35.4
-1.7
3
43.7
37.6
Minor BPS
43.9
-0.3
2.3
64.71
46

Associated Gene:

Gene:
IFFO2
Ensembl Gene ID:
ENSAPLG00000011713
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012226
6759399 - 6796424
37026