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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6785097_6785394_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6785097 - 6785394
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGCAGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTTAG
U12 Branch Point Sequence:
GGCCTCTTAGTT
Flanking Amino Acid:
LESMVETLREAQEAEALQEE
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
55.1
0.13
1.5
55
42.7
Major PPT
51.5
0.04
1.7
62.3
38.5
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
50
0.08
1.6
62.54
41.7

Associated Gene:

Gene:
IFFO2
Ensembl Gene ID:
ENSAPLG00000011713
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012226
6759399 - 6796424
37026