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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6787849_6789531_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6787849 - 6789531
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCAATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTCTCTTCAATT
Flanking Amino Acid:
NSEDVSKIFQVASKKKERKL
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
70.7
41.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
65
0.34
1.1
69
35.1
Minor 5ss
29.8
-2.3
2.6
34
41.4
Minor BPS
70.3
0.72
1.5
83.73
37.9

Associated Gene:

Gene:
IFFO2
Ensembl Gene ID:
ENSAPLG00000011713
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012226
6759399 - 6796424
37026