About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6789675_6792329_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6789675 - 6792329
Intron Length:
2655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
GTTACCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
GTTACCTTAACA
Flanking Amino Acid:
TDEMKRMFNQLRETFDFDDD
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
80.3
34.1
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
71.8
0.49
1
66.1
39.5
Minor 5ss
39.1
-1.2
3.1
61.3
43
Minor BPS
82.7
1.02
1.1
85.49
33.2

Associated Gene:

Gene:
IFFO2
Ensembl Gene ID:
ENSAPLG00000011713
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012226
6759399 - 6796424
37026