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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6792451_6794711_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6792451 - 6794711
Intron Length:
2261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
AGTTTCTTGACA
Flanking Amino Acid:
CNPSIDLQGEEENLGNLIHE
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
80.8
0.69
0.9
74.3
35.9
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
74.6
0.77
1.1
77.11
32.9

Associated Gene:

Gene:
IFFO2
Ensembl Gene ID:
ENSAPLG00000011713
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012226
6759399 - 6796424
37026